binney.data package

Data Module

exception BinomDataError

Bases: binney.BinneyException

class BinomDataSpecs(col_obs, col_obs_se=None, col_groups=None, col_total=None)

Bases: anml.data.data_specs.DataSpecs

col_total: str = None

class LRSpecs(col_success, col_total, col_group=None, covariates=None, splines=None, coefficient_priors=None, coefficient_prior_var=None)

Bases: object

configure_data(df)

configure_new_data(df)

Processes a new data frame so that it will create a new design matrix.

Parameters

df (DataFrame) – Data frame with covariates in the original form as before, but with a new design matrix.

make_parameter_set(coefficient_priors=None, coefficient_prior_var=None)

Spline Module

make_spline_variables(splines, coefficient_priors=None, coefficient_prior_var=None)

Creates spline variables with optional coefficient priors and shape constraints.

Parameters

• splines (Dict[str, Dict[str, Any]]) –

• coefficient_priors (Optional[List[float]]) –

• coefficient_prior_var (Optional[float]) –

Returns

Return type

List of spline variables that can be used in a parameter.